PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099122.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 361aa    MW: 39627.3 Da    PI: 4.9906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.6e-16142188455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_011099122.1 142 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 188
                     6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-19135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-16141192No hitNo description
PfamPF000102.3E-13142188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MANLYNSTAK NCSSYSSPQE PDEISVFLQQ ILLRSTSMRQ QSLPTPTDHL QAENQEPALV  60
PGQSRRQISV LDASSGLNSS SGCSFTGRVV ANVSSSSVGN LDNEPDEYDY ESEEAVEALV  120
EETAPKPTPP RSSSKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK TDKASMLDEA  180
IEYLKQLQLQ VQMLTMRNGL SLYPVCLPGM LQSNEISQLR MGIDADKFLN INMAKTNSLD  240
QNISADALLG LQENCVRQAP VAEFSSMISR KTSFEAESSP QDQFKTFQLS HSSKENELPC  300
QPLNGNCPQT RSTGAKATSS ISLETQTSSL KENTLEACLA GGNYLLPNFV SNPIFSSPMN  360
M
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575155e-76KP257515.1 Salvia miltiorrhiza clone 82 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099122.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLA0A0H3YC581e-141A0A0H3YC58_SALMI; Basic helix-loop-helix transcription factor
STRINGPGSC0003DMT4000102537e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-39bHLH family protein